Skip to main content

Genetic Resources of Freshwater Neotropical Fishes

  • Chapter
  • First Online:
Genetic Resources of Neotropical Fishes

Abstract

South American rivers contain the most diverse, but also one of the more poorly known, freshwater fish faunas of the world. While significant progress is being made on understanding the systematics and taxonomy of Neotropical fish groups (Malabarba et al. 1998), much information of critical utility to management is yet unknown about the genetics of Neotropical fish populations. Against the background of the zoogeography and evolutionary theory, and with the technical and analytic tools presented in earlier chapters, we now turn to a taxon-by-taxon account of what is known and what we must yet learn in order to effectively conserve Neotropical fish resources. While we focus on fishes of importance to fisheries and aquaculture, we also briefly note developments regarding other fishes. To set the context for our review of the literature, it would be useful to define expectations for how fish species might be genetically structured, and how we would document that experimentally.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Abe, K.T., Mariguela, T.C., Avelino, G.S., Foresti, F., & Olivera, C. (2014). Systematic and historical biogeography of the Bryconidae (Ostariophysi: Characiformes) suggsting a new rearrangement of its genera and an old origin of Mesoamerican ichthyofauna. BMC Evolutionary Biology, 14, 152.

    Google Scholar 

  • Agostinho, A. A., Thomaz, S. M., & Gomes, L. C. (2005). Conservation of the biodiversity of Brazil’s inland waters. Conservation Biology, 19, 646–652.

    Google Scholar 

  • Agudelo-Zamora, H. D., Lopez-Macias, J. N., & Sanchez-Paez, C. L. (2007). Habito alimentares do aruana (Osteoglossum bichirrhosum Vandelli, 1829)(Pisces: Osteoglossidae) no alto Rio Putomayo, area do Parque Nacional de Paya, Putomayo, Colombia. Acta Biologica Paranaense, 36, 91–101.

    Google Scholar 

  • Alexander, H., & Breden, F. (2004). Sexual isolation and extreme morphological divergence in the Cumana guppy: A possible case of incipient speciation. Journal of Evolutionary Biology, 17, 1238–1254.

    Google Scholar 

  • Alexander, H., Taylor, J. S., Wu, S.-T., & Breden, F. (2006). Parallel evolution and vicariance in the guppy (Poecilia reticulata) over multiple spatial and temporal scales. Evolution, 60, 2353–2369.

    Article  Google Scholar 

  • Allendorf, F. W., & Luikart, G. (2007). Conservation and the genetics of populations. Malden: Blackwell Publishing.

    Google Scholar 

  • Almeida, O. T., McGrath, D. G., & Ruffino, M. L. (2001). The commercial fisheries of the lower Amazon: An economic analysis. Fisheries Management and Ecology, 8, 253–269.

    Article  Google Scholar 

  • Almeida, F. S. D., Sodre, L. M. K., & Contel, E. P. B. (2003). Population structure analysis of Pimelodus maculatus (Pisces, Siluriformes) from the Tietê and Pananapanema Rivers (Brazil). Genetics and Molecular Biology, 26, 301–305.

    Article  Google Scholar 

  • Almeida, M. P., Barthem, R. B., Viana, A. S., & Charvet-Almeida, P. (2009). Factors affecting the distribution and abundance of freshwater stingrays (Chondrichthyes: Potamotrygonidae) at Marajó Island, mouth of the Amazon River. Pan-American Journal of Aquatic Sciences, 4, 1–11.

    Google Scholar 

  • Alves-Gomes, J., Orti, G., Haygood, M., Heiligenberg, W., & Meyer, A. (1995). Phylogenetic analysis of the South American electric fishes (Order Gymnotiformes) and the evolution of their electrogenic system: A synthesis based on morphology, electrophysiology, and mitochondrial sequence data. Molecular Biology and Evolution, 12, 298–318.

    CAS  PubMed  Google Scholar 

  • Amado, M.V., Farias, I.P., Hrbek, T. (2011a). Genetic characterization of Amazonian discus fishes of the genus Symphysodon based on microsatellite markers: Implications for systematics and classification. International Journal of Evolutionary Biology, article ID 360654.

    Google Scholar 

  • Amado, M.V., Farias, I.P., Hrbek, T. (2011b). A molecular perspective on systematics, taxonomy and classification Amazonian discus fishes of the genus Symphysodon. International Journal of Evolutionary Biology, article ID 360654.

    Google Scholar 

  • Amaral, C. R., Brito, P. M., Silva, D. A., & Carvalho, E. F. (2013). A new cryptic species of South American freshwater pufferfish of the Genus Colomesus (Tetraodontidae), based on both morphology and DNA data. PLoS ONE, 8(9), e74397.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Andrade, F., Schneider, H., Farias, I., Feldberg, E., & Sampaio, I. (2001). Análise filogenética de duas espécies simpátricas de tucunaré (Cichla, Perciformes), com registro de hibridização em diferentes pontos da bacia Amazônica. Revista Virtual de Iniciação Acadêmica da UFPA, 1, 1–11.

    Google Scholar 

  • Antao, T., Lopes, A., Lopes, R. J., Beja-Pereira, A., & Luikart, G. (2008). LOSITAN: A workbench to detect molecular adaptation based on a F ST-outlier method. BMC Bioinformatics, 9, 323.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Arantes, C. C., Castello, L., & Garcez, D. S. (2007). Variações entre contagem de Arapaima gigas (Schinz) (Osteoglossomorpha, Osteoglossidae) feitas por pescadores individualmente em Mamirauá, Brasil. Pan-American Journal of Aquatic Science, 2, 263–269.

    Google Scholar 

  • Araripe, J., Rego, P. S., Queiroz, H., Sampaio, I., & Schneider, H. (2013). Dispersal capacity and genetic structure of Arapaima gigas on different geographic scales using microsatellite markers. PLoS ONE, 8, e54470.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Araújo, M.L.G., Charvet-Almeida, P., Almeida, M.P., Pereira, H. (2004). Freshwater stingrays (Potamotrygonidae): Atatus, conservation and challenges. In: AC 20 Informative 8. https://www.researchgate.net/profile/Henrique_Pereira7/publication/228945285_Freshwater_stingrays_(Potamotrygonidae)_status_conservation_and_management_challenges/links/5486d9080cf289302e2c4384.pdf.

  • Argumedo, E., Lopez, J. N., & Sanchez-Paez, C. (2006). Sistemas de produccion de arowanas Suramericanas, una alternativa de aprovechemiento sostenible de la biodiversidade ictica y de fortalizamieno de la acuicultura Amazonica. Revista Electronica de Ingenieria en Produccion Acuicola, vol. 2.

    Google Scholar 

  • Arroyave, J., & Stiassny, M. L. J. (2011). Phylogenetic relationships and the temporal context for the diversification of African characins of the family Alestidae (Ostariophysi: Characiformes): Evidence from DNA sequence data. Molecular Phylogenetics and Evolution, 60, 385–397.

    Google Scholar 

  • Ashikaga, F. Y., Orsi, M. L., Oliveira, C., Senhorini, J. A., & Foresti, F., (2015). The endangered species Brycon orbignyanus: genetic analysis and definition of priority areas for conservation. Environmental Biology of Fishes 98, 1845–1855.

    Google Scholar 

  • Avise, J. C. (2000). Phylogeography: The history and formation of species. Cambridge, MA: Harvard University Press.

    Google Scholar 

  • Avise, J. (2009). Phylogeography: Retrospect and prospect. Journal of Biogeography, 39, 3–15.

    Article  Google Scholar 

  • Avise, J. C., & Selander, R. K. (1972). Genetics of cave-dwelling fishes of the genus Astyanax. Evolution, 26, 1–19.

    Article  PubMed  Google Scholar 

  • Barbarino, A., & Lasso, C. A. (2005). La pesca comercial de la raya manta Paratrygon aiereba (Müller & Henle, 1841) (Myliobatiformes, Potamotrygonidae), en el Rio Apure, Venezuela. Acta Apuroquia, 1, 24–31.

    Google Scholar 

  • Barroca, T. M., Arantes, F. P., Magalhães, B. F., Siqueira, F. F., Horta, C. C. R., Pena, I. F., Dergam, J. A., & Kalapothakis, E. (2012). Genetic diversity and population structure of Prochilodus costatus and Prochilodus argenteus preceding dam construction in the Paraopeba River, São Francisco River Basin, Minas Gerais, Brazil. Open Journal of Genetics, 2, 121–130.

    Article  Google Scholar 

  • Barroso, R. M., Hilsdorf, A. W. S., Moreira, H. L. M., Cabello, P. H., & Traub-Cseko, Y. M. (2005). Genetic diversity of wild and cultured populations of Brycon opalinus (Cuvier, 1819) (Characiforme, Characidae, Bryconiae) using microsatellites. Aquaculture, 247, 51–65.

    Article  CAS  Google Scholar 

  • Barthem, R., & Goulding, M. (2007). Um Ecossistema Inesperado: A Amazônia Revelada Pela Pesca. Lima: Amazon Conservation Association. 240 pp.

    Google Scholar 

  • Batista, J. S., & Alves-Gomes, J. A. (2006). Phylogeography of Brachyplatystoma rousseauxii (Siluriformes – Pimelodidae) in the Amazon Basin offers preliminary evidence for the first case of “homing” for an Amazonian migratory catfish. Genetics and Molecular Research, 5, 723–740.

    Google Scholar 

  • Batista, J. S., Formiga-Aquino, K., Farias, I. P., & Alves-Gomes, J. A. (2004). Genetic variability studies of piramutaba – Brachyplatystoma vaillantii and dourada – B. rousseauxii (Pimelodidae: Siluriformes) in the Amazon: Basis for management and conservation. In C. E. C. Freitas, M. Petrere Jr., A. A. F. Rivas, & D. MacKinlay (Eds.), International congress on the biology of fish, Manaus (pp. 253–258). Bethesda: American Fisheries Society.

    Google Scholar 

  • Beaumont, M. A., & Nichols, R. A. (1996). Evaluating loci for use in the genetic analysis of population structure. Proceedings of the Royal Society of London B, 363, 1619–1626.

    Article  Google Scholar 

  • Beerli, P. (2006). Comparison of Bayesian and maximum likelihood inference of population genetic parameters. Bioinformatics, 22, 341–345.

    Article  CAS  PubMed  Google Scholar 

  • Beerli, P., & Felsenstein, J. (2001). Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proceedings of the National Academy of Sciences of the United States of America, 98, 4563–4568.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Berbel-Filho, W. M., Martinez, P. A., Ramos, T. P. A., Torres, R. A., & Lima, S. M. Q. (2016). Inter- and intra-basin phenotypic variation in two riverine cichlids from northeastern Brazil: Potential eco-evolutionary damages of Sao Francisco interbasin water transfer. Hydrobiologia, 766, 43–56.

    Article  Google Scholar 

  • Bermingham, E., & Martin, A. P. (1998). Comparative mtDNA phylogeography of Neotropical freshwater fishes: Testing shared history to infer the evolutionary landscape of lower Central America. Molecular Ecology, 7, 499–517.

    Article  CAS  PubMed  Google Scholar 

  • Boni, T. A., Padial, A. A., Prioli, S. M., Lucio, L. C., Maniglia, T. C., Bignotto, T. S., Panarari-Antunes, R. S., Prioli, R. A., & Prioli, A. J. (2011). Molecular differentiation of species of the genus Zungaro (Siluriformes, Pimelodidae) from the Amazon and Paraná-Paraguay River basins in Brazil. Genetics and Molecular Research, 10, 2795–2805.

    Article  CAS  PubMed  Google Scholar 

  • Borba, R. S., Silva, E. L., Ponzetto, J. M., Pozzobon, A. P. B., Centofante, L., Alves, A. L., & Parise-Maltempi, P. P. (2013). Genetic structure of the ornamental tetra fish species Piabucus melanostomus Holmberg, 1891 (Characidae, Iguanodectinae) in the Brazilian Pantanal wetlands inferred by mitochondrial DNA sequences. Biota Neotropica, 13, 42–46.

    Article  Google Scholar 

  • Buitrago-Suárez, U. A., & Burr, B. M. (2007). Taxonomy of the catfish genus Pseudoplatystoma Bleeker (Siluriformes: Pimelodidae) with recognition of eight species. Zootaxa, 1512, 1–38.

    Google Scholar 

  • Bussing, W. A. (1985). Patterns of distribution of the Central American ichthyofauna. In F. G. Stehli & S. D. Webb (Eds.), The great American biotic interchange (pp. 453–473). New York: Plenum Publishing.

    Chapter  Google Scholar 

  • Cala, P. (1973). Presencia de Osteoglossum em los Llanos (Orinoquia). Acta Zoologica Colombiana, 18, 8.

    Google Scholar 

  • Calcagnotto, D., & DeSalle, R. (2009). Population genetic structuring in pacu (Piaractus mesopotamicus) across the Paraná-Paraguay basin: Evidence from microsatellites. Neotropical Ichthyology, 7, 607–616.

    Article  Google Scholar 

  • Calcagnotto, D., Schaefer, S. A., & DeSalle, R. (2005). Relationships among characiform fishes inferred from analysis of nuclear and mitochondrial sequences. Molecular Phylogenetics and Evolution, 36, 135–153.

    Article  CAS  PubMed  Google Scholar 

  • Cardoso, Y. P., & Montoya-Burgos, J. I. (2009). Unexpected diversity in the catfish Pseudancistrus brevispinis reveals dispersal routes in a Neotropical center of endemism: The Guyanas Region. Molecular Ecology, 18, 947–964.

    Article  CAS  PubMed  Google Scholar 

  • Carvajal, F., Nunes, J., Duponchelle, F., & Renno, J. F. (2005). Variabilidad genetica y estructuración poblacional de Cichla monoculus en el Alto Madera (Bolivia), a partir del analisis EPIC-PCR. In J. F. Renno, C. Garcia, F. Duponchelle, & J. Nunes (Eds.), Biologia de las Poblaciones de Peces de la Amazonia y Piscicultura (pp. 111–115). Iquito: IIAP/IRP.

    Google Scholar 

  • Carvajal-Vallejos, F. M., Duponchelle, F., Torrico Ballivian, J. P., Hubert, N., Nuñez Rodríguez, J., Berrebi, P., Sirvas Cornejo, S., & Renno, J.-F. (2010). Population genetic structure of Cichla pleiozona (Perciformes: Cichlidae) in the Upper Madera basin (Bolivian Amazon): Sex-biased dispersal? Molecular Phylogenetics and Evolution, 57, 1334–1340.

    Article  CAS  PubMed  Google Scholar 

  • Carvalho, G. R., Shaw, P. W., Magurran, A. E., & Seghers, B. H. (1991). Marked genetic divergence revealed by allozymes among populations of the guppy Poecilia reticulata (Poecilidae), in Trinidad. Biological Journal of the Linnean Society, 42, 389–405.

    Article  Google Scholar 

  • Carvalho, M. R., Lovejoy, N. R., & Rosa, R. S. (2003). Potamotrygonidae (river stingrays). In R. E. Reis, S. O. Kullander, & C. J. Ferraris (Eds.), Check list of the freshwater fishes of South and Central America (pp. 22–28). Porto Alegre: EDIPUCRS.

    Google Scholar 

  • Carvalho, M. R., Maisey, J. G., & Grande, L. (2004). Freshwater stingrays of the Green River Formation of Wyoming (Early Eocene), with the description of a new genus and species and an analysis of its phylogenetic relationships (Chondrichthyes: Myliobatiformes). Bulletin of the American Museum of Natural History, 284, 1–136.

    Article  Google Scholar 

  • Carvalho, D. C., Oliveira, D. A. A., Beheregaray, L. B., & Torres, R. A. (2012). Hidden genetic diversity and distinct evolutionarily significant units in a commercially important Neotropical apex predator, the catfish Pseudoplatystoma corruscans. Conservation Genetics, 13, 1671–1675.

    Article  Google Scholar 

  • Carvalho-Costa, L. F., Hatanaka, T., & Galetti Jr., P. M. (2008). Evidence of lack of population substructuring in the Brazilian freshwater fish Prochilodus costatus. Genetics and Molecular Biology, 31(Suppl), 377–380.

    Article  CAS  Google Scholar 

  • Castello, L. (2008). Lateral migration of Arapaima gigas in floodplains of the Amazon. Ecology of Freshwater Fish, 17, 38–46.

    Article  Google Scholar 

  • Castelloe, J., & Templeton, A. R. (1994). Root probabilities for intraspecific gene trees under neutral coalescent theory. Molecular Phylogenetics and Evolution, 3, 102–113.

    Article  CAS  PubMed  Google Scholar 

  • Castro, R.M.C. (1990). Revisao taxonomica da familia Prochilodontidae (Ostriophysi, Characiformes). Ph.D. dissertation, Universidade de Sao Paulo, Brazil.

    Google Scholar 

  • Castro Paz, F. P., da Silva Batista, J., & Porto, J. I. (2014). DNA barcodes of rosy tetras and allied species (Characiformes: Characidae: Hyphessobrycon) from the Brazilian Amazon basin. PLoS ONE, 9, e98603.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • CCI (Corporacion Colombia Internacional). (2009). Sistema de información de pesca y acuicultura boletín mensual. Servicio de Información Agropecuaria. http://www.cci.org.co/cci/cci_x/datos/BoletinesIncoder/Mensual/BolMay2009.pdf. Accessed 23 May 2012.

  • Centofante, L., Bertollo, L. A. C., & Moreira-Filho, O. (2006). Chromosomal differentiation between populations of Oligosarcus hepsetus (Teleostei, Characidae) from small tributaries at opposite margins of the Paraiba Do Sul River (Brazil). Brazilian Archives of Biology and Technology, 49, 981–987.

    Google Scholar 

  • Charvet-Almeida, P., Araújo, M. L. G., & Almeida, M. P. (2005). Reproductive aspects of freshwater stingrays (Chondrichthyes: Potamotrygonidae) in the Brazilian Amazon Basin. Journal of Atlantic Fishery Science, 35, 165–171.

    Article  Google Scholar 

  • Chiachio, M. C., Oliveira, C., & Montoya-Burgos, J. I. (2008). Molecular systematic and historical biogeography of the armored Neotropical catfishes Hypoptopomatinae and Neoplecostominae (Siluriformes: Loricariidae). Molecular Phylogenetics and Evolution, 49(2), 606–617.

    Article  CAS  PubMed  Google Scholar 

  • Collette, B. B. (1974). Potamorrhaphis petersi, a new species of freshwater needlefish (Belonidae) from the Upper Orinoco and Rio Negro. Proceedings of the Biological Society of Washington, 87, 31–40.

    Google Scholar 

  • Collette, B. B. (1982). South American freshwater needlefishes of the genus Potamorrhaphis (Beloniformes: Belonidae). Proceedings of the Biological Society of Washington, 95, 714–747.

    Google Scholar 

  • Compagno, L. J. V. (1984). FAO species catalogue. Sharks of the World: An annotated and illustrated catalogue of shark species known to date. II. Carcharhiniformes. Rome: FAO.

    Google Scholar 

  • Concheiro Pérez, G. A., Rícan, O., Ortí, G., Bermingham, E., Doadrio, I., & Zardoya, R. (2007). Phylogeny and biogeography of 91 species of heroine cichlids (Teleostei: Cichlidae) based on sequences of the cytochrome b gene. Molecular Phylogenetics and Evolution, 43, 91–110.

    Article  CAS  Google Scholar 

  • Cooke, G. M., Chao, N. L., & Beheregaray, L. B. (2009). Phylogeography of a flooded forest specialist fish from central Amazonia based on intron DNA: The cardinal tetra Paracheirodon axelrodi. Freshwater Biology, 54(6), 1216–1232.

    Article  CAS  Google Scholar 

  • Cooke, G. M., Chao, N. L., & Beheregaray, L. B. (2012a). Five cryptic species in the Amazonian catfish Centromochlus existimatus identified based on biogeographic predictions and genetic data. PLoS ONE, 7, e48800.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cooke, G. M., Chao, N. L., & Beheregaray, L. B. (2012b). Divergent natural selection with gene flow along major environmental gradients in Amazonia: Insights from genome scans, population genetics and phylogeography of the characin fish Triportheus albus. Molecular Ecology, 21, 2410–2427.

    Article  PubMed  Google Scholar 

  • Coronel, J. S., Maes, J. E., Claus, S., Vandamme, P. A., & Volckaert, F. A. M. (2004). Differential population history in the migratory catfishes Brachyplatystoma flavicans and Pseudoplatystoma fasciatum (Pimelodidae) from the Bolivian Amazon assessed with nuclear and mitochondrial DNA markers. Journal of Fish Biology, 65, 859–868.

    Article  Google Scholar 

  • Crandall, K. A., Bininda-Emonds, O. R. P., Mace, G. M., & Wayne, R. K. (2000). Considering evolutionary processes in conservation biology. Trends in Ecology & Evolution, 15, 290–295.

    Article  CAS  Google Scholar 

  • Crispo, E., Bentzen, P., Reznick, D. N., Kinnison, M. T., & Hendry, A. P. (2006). The relative influence of natural selection and geography on gene flow in guppies. Molecular Ecology, 15, 49–62.

    Article  CAS  PubMed  Google Scholar 

  • Crossa, M., & Petrere Junior, M. (1999). Morphometric relationships and indirect determination of the length frequency structure of the pirarucu Arapaima gigas Cuvier. Fisheries Management and Ecology, 6, 173–186.

    Article  Google Scholar 

  • Cruz, V. P., Vera, M., Mendonça, F. F., Pardo, B. G., Martinez, P., Oliveira, C., & Foresti, F. (2015). First identification of interspecies hybridization in the freshwater stingrays Potamotrygon motoro and P. falkneri (Myliobatiformes, Potamotrygonidae). Conservation Genetics, 16, 241–245.

    Article  CAS  Google Scholar 

  • Cuvier, G., & Valenciennes, A. (1847). Histoire naturelle des poissons. Tome dix-neuvie’me. Suite du livre dixneuvieme. Brochets ou Lucioides. Livre vingtieme. De quelques familles de Malacopterygiens, intermediaires entre les Brochets et les Clupes. P. Bertrand, Paris V. 19:i–xix + 1–544 + 6 pp. pps. 554–590.

    Google Scholar 

  • Daniel-Silva, M. F. Z., & Almeida-Toledo, L. F. (2001). Chromosome R-banding pattern and conservation of a marker chromosome in four species, genus Astyanax (Characidae, Tetragonopterinae). Caryologia, 54, 209–215.

    Article  Google Scholar 

  • Dantas, H. L., dos Santos Neto, M. A., Cavalcanti Oliveira, K. K., Severi, W., Mendonça Diniz, F., & Moura Coimbra, M. R. (2013). Genetic diversity of captive and wild threatened catfish Pseudoplatystoma corruscans in the São Francisco River. Reviews in Fisheries Science, 21, 237–246.

    Article  Google Scholar 

  • DaSilva, T. (2009). Marcadores moleculares para análise da variabilidade genética de populações do aruanã (Osteoglossum bicirrhosum). Dissertation, Universidade Federal do Amazonas, Manaus.

    Google Scholar 

  • DaSilva, T., Hrbek, T., & Farias, I. (2009). Microsatellite markers for the silver arowana (Osteoglossum bicirrhosum, Osteoglossidae, Osteoglossiformes). Molecular Ecology Resources, 9, 1019–1022.

    Article  CAS  Google Scholar 

  • De Souza, C. D., Oliveira, C., & Pereira, L. H. G. (2015). Knodus moenkhausii (Characiformes: Characidae): One fish species, three hydrographic basins a natural or anthropogenic phenomenon? DNA Barcodes, 3, 129–138.

    Article  Google Scholar 

  • DeWoody, J. A., & Avise, J. C. (2000). Microsatellite variation in marine freshwater and anadromous fishes compared with other animals. Journal of Fish Biology, 56, 461–473.

    Article  CAS  Google Scholar 

  • Diaz de Gamero, M. L. (1996). The changing course of the Orinoco river during the Neogene: A review. Palaeogeography, Palaeoclimatology, Palaeoecology, 123, 385–402.

    Article  Google Scholar 

  • Diniz-Filho, J. A. F., & Telles, M. P. D. C. (2002). Spatial autocorrelation analysis and the identification of operational units for conservation in continuous populations. Conservation Biology, 16, 924–935.

    Article  Google Scholar 

  • Dizon, A. E., Lockyear, C., Perrin, W. F., Demaster, D. P., & Sisson, J. (1992). Rethinking the stock concept – A phylogeographic approach. Conservation Biology, 6, 24–36.

    Google Scholar 

  • Dowling, T. E., Martasian, D. P., & Jeffery, W. R. (2002). Evidence for multiple genetic forms with similar eyeless phenotypes in the blind cavefish, Astyanax mexicanus. Molecular Biology and Evolution, 19, 446–455.

    Article  CAS  PubMed  Google Scholar 

  • Dreyer, C., Hoffmann, M., Lanz, C., Willing, E. M., Riester, M., Warthmann, N., Sprecher, A., Tripathi, N., Henz, S. R., & Weigel, D. (2007). ESTs and EST-linked polymorphisms for genetic mapping and phylogenetic reconstruction in the guppy, Poecilia reticulata. BMC Genomics, 8, 269.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Elmer, K. R., & Meyer, A. (2011). Adaptation in the age of ecological genomics: Insights from parallelism and convergence. Trends in Ecology and Evolution, 26, 298–306.

    Article  PubMed  Google Scholar 

  • Epperson, B. K. (1993). Recent advances in correlation studies of spatial patterns of genetic variation. Evolutionary Biology, 27, 95–155.

    Google Scholar 

  • Eschmeyer, W.N., & Fong, J.D. (2016). Species by family/subfamily. http://research.calacademy.org/research/ichthyology/catalog/SpeciesByFamily.asp.

  • Escobar, M. D., Andrade-López, J., Farias, I. P., & Hrbek, T. (2015). Delimiting evolutionarily significant units of the fish, Piaractus brachypomus (Characiformes: Serrasalmidae), from the Orinoco and Amazon river basins with insight on routes of historical connectivity. Journal of Heredity, 106, 428–438.

    Article  PubMed  Google Scholar 

  • Escobar, M. D., Farias, I. P., Taphorn, D. C., Landines, B. M., & Hrbek, T. (2012). Molecular diagnosis of the arowanas Osteoglossum ferreirai Kanazawa, 1996 and O. bicirrhossum (Cuvier, 1829) from the Orinoco and Amazon river basins. Unpublished manuscript cited by Olivares et al. (2013).

    Google Scholar 

  • Fajen, A., & Breden, F. (1992). Mitochondrial-DNA sequence variation among natural populations of the Trinidad guppy, Poecilia reticulata. Evolution, 46, 1457–1465.

    Google Scholar 

  • Falla, P., & Poveda, J. (2008). Contribución a la gestión sostenible y al conocimiento biológico y socio económico de la cadena de valor de peces ornamentales de Puerto Carreño, reserva de biosfera el tuparo (Vichada-Colombia). Bogota: Fundación Omacha-Fundación Horizonte Verde.

    Google Scholar 

  • FAO (Food and Agriculture Organization of the United Nations). (2000). Comision de pesca continental para America Latina (COPESCAL): informe del taller regional sobre manejo de lãs pesquerias de bagres migratórios del Amazonas. Rome: FAO. 99 p.

    Google Scholar 

  • Farias, I. P., & Hrbek, T. (2008). Patterns of diversification in the discus fishes (Symphysodon spp. Cichlidae) of the Amazon basin. Molecular Phylogenetics and Evolution, 49(1), 32–43.

    Article  CAS  PubMed  Google Scholar 

  • Farias, I. P., Ortí, G., Sampaio, I., Schneider, H., & Meyer, A. (1999). Mitochondrial phylogeny of the family Cichlidae: Monophyly and fast molecular evolution of the Neotropical assemblage. Journal of Molecular Evolution, 48, 703–711.

    Article  CAS  PubMed  Google Scholar 

  • Farias, I. P., Ortí, G., & Meyer, A. (2000). Total evidence: Molecules, morphology, and the phylogenetics of cichlid fishes. Journal of Experimental Zoology, 288, 76–92.

    Article  CAS  PubMed  Google Scholar 

  • Farias, I. P., Hrbek, T., Brinkmann, H., Sampiao, I., & Meyer, A. (2003). Characterization and isolation of DNA microsatellite primers for Arapaima gigas, an economically important but severely over-exploited fish species of the Amazon basin. Molecular Ecology Notes, 3, 128–130.

    Article  CAS  Google Scholar 

  • Farias, I. P., Torrico, J. P., García-Dávila, C., Santos, M. C. F., Hrbek, T., & Renno, J.-F. (2010). Are rapids a barrier for floodplain fishes of the Amazon basin? A demographic study of the keystone floodplain species Colossoma macropomum (Teleostei: Characiformes). Molecular Phylogenetics and Evolution, 56, 1129–1135.

    Article  PubMed  Google Scholar 

  • Ferraris Jr., C. J., Miya, M., Azuma, Y., & Nishida, M. (2007). Checklist of catfish, recent and fossil (Osteichthyes: Siluriformes), and catalogue of siluriform primary types. Zootaxa, 1418, 1–628.

    Article  Google Scholar 

  • Ferreira, D. G., Galindo, B. A., Frantine-Silva, W., Almeida, F. S., & Sofia, S.H. (2015). Genetic structure of a Neotropical sedentary fish revealed by AFLP, microsatellite and mtDNA markers: a case study. Conservation Genetics, 16, 151–166.

    Google Scholar 

  • Ferreira, D. G., Galindo, B. A., Silva, W. F., Almeida, F. S., & Sofia, S. H. (2014a). Genetic structure of a Neotropical sedentary fish revealed by AFLP, microsatellite and mtDNA markers: A case study. Conservation Genetics, 16, 151–166.

    Google Scholar 

  • Ferreira, D. G., Souza-Shibatta, L., Shibatta, O. A., Sofia, S. H., Carlsson, J., Dias, J. H., Makrakis, S., & Makrakis, M. C. (2016). Genetic structure and diversity of migratory freshwater fish in a fragmented Neotropical river system. Reviews in Fish Biology and Fisheries, 27, 209-231.

    Google Scholar 

  • Frankham, R., Ballou, J. R., & Briscoe, D. A. (2002). Introduction to conservation genetics. Cambridge, UK: Cambridge University Press. 617p.

    Book  Google Scholar 

  • Frederico, R. G., Farias, I. P., Araújo, M. L., Charvet-Almeida, P., & Alves-Gomes, J. A. (2012). Phylogeography and conservation genetics of the Amazonian freshwater stingray Paratrygon aiereba Müller & Henle, 1841 (Chondrichthyes: Potamotrygonidae). Neotropical Ichthyology, 10, 71–80.

    Article  Google Scholar 

  • Froese R., & Pauly, D. (2016). FishBase. World Wide Web electronic publication. www.fishbase.org.

  • Fu, Y.-X. (1997). Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915–925.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Garcez, R., Calcognotto, D., & Foresti de Almeida-Toledo, L. (2011). Population structure of the migratory fish Prochilodus lineatus (Characiformes) from Rio Grande Basin (Brazil), an area fragmented by dams. Aquatic Conservation: Marine and Freshwater Ecosystems, 21, 268–275.

    Article  Google Scholar 

  • Garcia, G., Wlasiuk, G., & Lessa, E. P. (2000). High levels of mitochondrial cytochrome b divergence in annual killifishes of the genus Cynolebias (Cyprinodontiformes, Rivulidae). Zoological Journal of the Linnean Society, 129, 93–110.

    Article  Google Scholar 

  • Garcia, G., Pereira, A., Carrera, I., & Marquez, A. (2002). Genetic relationships in a complex of Cynolebias species (Cypriniodontiformes, Rivulidae) from eastern Uruguay and Southern Brazil. Biological Society Zoology Uruguay, 13, 1–11.

    Google Scholar 

  • García-Dávila, C., Duponchelle, F., Castro-Ruiz, D., Villacorta, J., Quérouil, S., Chota-Macuyama, W., Núnez, J., Römer, U., Carvajal-Vallejos, F., & Renno, J. F. (2013). Molecular identification of a cryptic species in the Amazonian predatory catfish genus (Bleeker, 1962) from Peru. Genetica, 141, 347–358.

    Article  PubMed  Google Scholar 

  • Goulding, M. (1979). Ecologia de Pesca do Rio Madeira. Manaus: INPA.

    Google Scholar 

  • Goulding, M. (1980). Fishes and the forest. Los Angeles: University of California Press.

    Google Scholar 

  • Gross, M. C., Schneider, C. H., Matiello, M. C. A., Leite, M. L., Bertollo, L. A. C., & Aatoni, R. F. (2004). Population structure, fluctuating asymmetry and genetic variability in an endemic and highly isolated Astyanax fish population (Characidae). Genetics and Molecular Biology, 27, 529–535.

    Article  Google Scholar 

  • Gustafson, R.G., Wainwright, T.C., Winans, G.A., Waknitz, F.W., Parker, L.T., Waples, R.S. (1997). Status review of sockeye salmon from Washington and Oregon. NOAA Technical Memorandum NMFS-NWFSC-33. http://www.nwfsc.noaa.gov/publications/scipubs/techmemos/tm33/int.html#wes.

  • Hallerman, E. M. (Ed.). (2003). Population genetics: Principles and applications for fisheries scientists. Bethesda: American Fisheries Society.

    Google Scholar 

  • Hastings, A. (1993). Complex interactions between dispersal and dynamics – Lessons from coupled logistic equations. Ecology, 74, 1362–1372.

    Google Scholar 

  • Hatanaka, T., Henrique-Silva, F., & Galetti Jr., P. M. (2006). Population structuring in a migratory freshwater fish Prochilodus argenteus (Characiformes, Prochilodontidae) from São Francisco River. Genetica, 126, 153–159.

    Article  PubMed  Google Scholar 

  • Hausdorf, B., Wilkens, H., & Strecker, U. (2011). Population genetic patterns revealed by microsatellite data challenge the mitochondrial DNA based taxonomy of Astyanax in Mexico (Characidae, Teleostei). Molecular Phylogenetics and Evolution, 60, 89–97.

    Article  PubMed  Google Scholar 

  • Hedrick, P. (1999). Perspective: Highly variable loci and their interpretation in evolution and conservation. Evolution, 53, 313–318.

    Article  PubMed  Google Scholar 

  • Hernández, C. L., Ortega-Lara, A., Sánchez-Garcés, G. C., & Alford, M. H. (2015). Genetic and morphometric evidence for the recognition of several recently synonymized species of trans-Andean Rhamdia (Pisces: Siluriformes: Heptapteridae). Copeia, 103, 563–579.

    Article  Google Scholar 

  • Hilsdorf, A. W. S., Azeredo-Espin, A. M. L., Krieger, M. H., & Krieger, J. E. (2002). Mitochondrial DNA diversity in wild and cultured populations of Brycon opalinus (Cuvier, 1819) (Characiformes, Characidae, Bryconinae) from the Paraiba do Sul Basin, Brazil. Aquaculture, 214, 81–91.

    Article  CAS  Google Scholar 

  • Hohenlohe, P. A., Bassham, S., Etter, P. D., Stiffler, N., Johnson, E. A., & Cresko, W. A. (2010). Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genetics, 6, e1000862.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Hollanda Carvalho, P., Queiroz, M., Lima, S., Zawadzki, H., Oliveira, C., & de Pinna, M. (2015). Phylogeographic patterns in suckermouth catfish Hypostomus ancistroides (Loricariidae): Dispersion, vicariance and species complexity across a Neotropical biogeographic region. Mitochondrial DNA, 16, 1–7.

    Article  CAS  Google Scholar 

  • Hoorn, C., Guerrero, J., Sarmiento, G. A., & Lorente, M. A. (1995). Andean tectonics as a cause of changing drainage patterns in Miocene northern South America. Geology, 23, 237–240.

    Article  Google Scholar 

  • Hrbek, T., Crossa, M., & Farias, I. P. (2007a). Conservation strategies for Arapaima gigas (Schinz, 1822) and the Amazonian varzea ecosystem. Brazilian Journal of Biology, 67, 909–917.

    Article  CAS  Google Scholar 

  • Hrbek, T., Farias, I. P., Crossa, M., Sampaio, I., Porto, J. I. R., & Meyer, A. (2005). Population genetic analysis of Arapaima gigas, one of the largest freshwater fishes of the Amazon basin: Implications for its conservation. Animal Conservation, 8, 297–308.

    Article  Google Scholar 

  • Hrbek, T., & Larson, A. (1999). The evolution of diapause in the killifish family Rivulidae (Atherinomorpha, Cyprinodontiformes): a molecular phylogenetic and biogeographic perspective. Evolution, 53,1200‑1216.

    Google Scholar 

  • Hrbek, T., Seckinger, J., & Meyer, A. (2007b). A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes. Molecular Phylogenetics and Evolution, 43, 986–998.

    Google Scholar 

  • Hubert, N., & Renno, J. F. (2006). Historical biogeography of South American freshwater fishes. Journal of Biogeography, 33, 1414–1436.

    Google Scholar 

  • Hubert, N., Bonillo, C., & Paugy, D. (2005a). Does elision account for molecular saturation: Case study based on mitochondrial ribosomal DNA among characiform fishes (Teleostei: Ostariophysii). Molecular Phylogenetics and Evolution, 35, 300–308.

    Article  CAS  PubMed  Google Scholar 

  • Hubert, N., Bonillo, C., & Paugy, D. (2005b). Early divergence among Alestidae (Teleostei, Ostariophyses, Characiformes): Mitochondrial evidences and congruence with morphological data. Comptes Rendus Biologies, 328, 477–491.

    Article  CAS  PubMed  Google Scholar 

  • Hubert, N., Duponchelle, F., Nunez, J., Garcia-Davila, C. A., Paugy, D., & Renno, J. F. (2007a). Phylogeography of the piranha genera Serrasalmus and Pygocentrus: Implications for the diversification of the Neotropical ichthyofauna. Molecular Ecology, 16, 2115–2136.

    Article  CAS  PubMed  Google Scholar 

  • Hubert, N., Duponchelle, F., Nunez, J., Rivera, R., Bonhomme, F., & Renno, J. F. (2007b). Isolation by distance and Pleistocene expansion of the lowland populations of the white piranha Serrasalmus rhombeus. Molecular Ecology, 16, 2488–2503.

    Article  CAS  PubMed  Google Scholar 

  • Huergo, G. M., Filgueiras-Souza, R. J., Batista, J. S., Formiga-Aquino, K., & Alves-Gomes, J. A. (2011). Molecular genetics as a tool for fisheries management in the Brazilian Amazon: Piraíba (Brachyplatystoma filamentosum and Brachyplatystoma capapretum) (Siluriformes: Pimelodidae) in white-water rivers. Pan-American Journal of Aquatic Sciences, 6, 280–289.

    Google Scholar 

  • Iervolino, F., Kawakami de Resende, E., & Hilsdorf, A. W. S. (2010). The lack of genetic differentiation of pacu (Piaractus mesopotamicus) populations in the Upper-Paraguay Basin revealed by the mitochondrial DNA D-loop region: Implications for fishery management. Fisheries Research, 101, 27–31.

    Article  Google Scholar 

  • Jeffery, W. R. (2008). Emerging model systems in evo-devo: Cavefish and microevolution of development. Evolution and Development, 10, 265–272.

    Article  PubMed  PubMed Central  Google Scholar 

  • Jeffery, W. R. (2009). Regressive evolution in Astyanax cavefish. Annual Review of Genetics, 43, 25–47.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jepsen, D. B., Winemiller, K. O., & Taphorn, D. C. (1997). Temporal patterns of resource partitioning among Cichla species in a Venezuelan blackwater river. Journal of Fish Biology, 51, 1085–1108.

    Google Scholar 

  • Kanazawa, R. H. (1966). The fishes of the genus Osteoglossum with a description of a new species from the Rio Negro. Ichthyology Aquarium Journal, 37, 161–172.

    Google Scholar 

  • Karl, S. A., Castro, A. L. F., Lopez, J. A., Charvet, P., & Burgess, G. H. (2011). Phylogeography and conservation of the bull shark (Carcharhinus leucas) inferred from mitochondrial and microsatellite DNA. Conservation Genetics, 12, 371–382.

    Article  Google Scholar 

  • Kuhner, M. K., Yamato, J., & Felsenstein, J. (1998). Maximum likelihood estimation of population growth rates based on the coalescent. Genetics, 149, 429–434.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Kullander, S. O. (1986). Cichlid fishes of the Amazon river drainage of Peru. Stockholm: Swedish Museum of Natural History.

    Google Scholar 

  • Kullander, S. O. (1998). A phylogeny and classification of the South American Cichlidae (Teleostei: Perciformes). In L. R. Malabarba, R. P. Reis, Z. M. Lucena, & C. A. S. Lucena (Eds.), Phylogeny and classification of neotropical fishes (pp. 461–498). Porto Alegre: Edipucrs.

    Google Scholar 

  • Kullander, S. O. (2003). Family Cichlidae (Cichlids). In R. E. Reis, S. O. Kullander, & C. J. Ferraris (Eds.), Checklist of the freshwater fishes of South and Central America (pp. 605–656). Porto Alegre: Museu de Ciencias e Tecnologia, Pontificia Universidade Catolica do Rio Grande do Sul.

    Google Scholar 

  • Kullander, S. O., & Ferreira, E. J. G. (2006). A review of the South American cichlid genus Cichla, with descriptions of nine new species (Teleostei: Cichlidae). Ichthyological Explorations of Freshwater, 17, 289–398.

    Google Scholar 

  • Larson, W. A., Seeb, L. W., Everett, M. V., Waples, R. K., Templin, W. D., & Seeb, J. E. (2014). Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha). Evolutionary Applications, 7, 355–369.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lauzanne, L., Loubens, G., & Le Guennec, B. (1991). Liste commentée des poissons de l’Amazonie bolivienne. Review Hydrobiolica Tropical, 24, 61–76.

    Google Scholar 

  • Leuzzi, M. S. P., Almeida, F. S., & Orsi, M. L. (2004). Analysis by RAPD of the genetic structure of Astyanax altiparanae (Pisces, Characiformes) in reservoirs on the Paranapanema River, Brazil. Genetics and Molecular Biology, 27, 355–362.

    Article  CAS  Google Scholar 

  • Lima, F. C. T. (2003). Subfamily Bryconinae. In R. E. Reis, S. O. Kullander, & C. J. Ferraris (Eds.), Check list of the freshwater fishes of South and Central America (pp. 174–181). Porto Alegre: EDIPUCRS.

    Google Scholar 

  • Lima, F. C. T. (2004). Brycon gouldingi, a new species from the Rio Tocantins drainage, Brazil (Ostariophysi: Characiformes: Characidae), with a key to the species in the basin. Ichthyological Explorations of Freshwaters, 15, 279–287.

    Google Scholar 

  • Lopera-Barrero, N. M. (2009). Conservation of Brycon orbignyanus natural populations and stocks for their reproductive, genetic, environmental sustainability: A model for species threatened with extinction. Ciencia Investigaciones Agrarias, 36, 191–208.

    Google Scholar 

  • López, L. (2006). Genetic variability and population structure of dorada (Brycon moorei sinuensis Dahl) in the Sinú River, Córdoba, Colombia. Lakes and Reservoirs: Research and Management, 11, 1–7.

    Article  Google Scholar 

  • Lopez-Fernandez, H., Honeycutt, R. L., & Winemiller, K. O. (2005). Molecular phylogeny and evidence for an adaptive radiation of geophagine cichlids from South America (Perciformes: Labroidei). Molecular Phylogenetics and Evolution, 34, 227–244.

    Article  CAS  PubMed  Google Scholar 

  • Lovejoy, N. R., & de Araujo, M. L. G. (2000). Molecular systematics, biogeography and population structure of Neotropical freshwater needlefishes of the genus Potamorrhaphis. Molecular Ecology, 9(3), 259–268.

    Article  CAS  PubMed  Google Scholar 

  • Lovejoy, N. R., Berminghan, E., & Martin, A. P. (1998). Marine incursion into South America. Nature, 369, 421–422.

    Article  CAS  Google Scholar 

  • Lundberg, J. G., & Akama, A. (2005). Brachyplatystoma capapretum: A new species of goliath catfish from the Amazon Basin, with a reclassification of allied catfishes (Siluriformes: Pimelodidae). Copeia, 3, 492–516.

    Article  Google Scholar 

  • Lundberg, J., & Chernoff, B. (1992). A Miocene fossil of the Amazonian fish Arapaima (Teleostei: Arapaimidae) from the Magdalena river region of Colombia: Biogeographic and evolutionary implications. Biotropica, 24, 2–14.

    Article  Google Scholar 

  • Lundberg, J. G., Marshall, L. G., & Guerrero, J. (1998). The stage for Neotropical fish diversification: A history of tropical South American rivers. In L. R. Malabarba, R. P. Vari, Z. M. S. Lucena, & C. A. S. Lucena (Eds.), Phylogeny and classification of Neotropical fishes. Porto Alegre: EDIPUCRS.

    Google Scholar 

  • Lynch, M., & Milligan, B. G. (1994). Analysis of population genetic structure with RAPD markers. Molecular Ecology, 3, 91–99.

    Article  CAS  PubMed  Google Scholar 

  • Machado, A. B. M., Drummond, B. M., & Paglia, A. P. (2008). Livro Vermelho da Fauna Brasileira Ameaçada de Extinção. Belo Horizonte: Fundação Biodiversitas.

    Google Scholar 

  • Magurran, A. E. (2005). Evolutionary ecology: The Trinidadian guppy. Oxford: Oxford University Press.

    Book  Google Scholar 

  • Maistro, E. L., Oliveira, C., & Foresti, F. (2000). Sympatric occurrence of two cytotypes of Astyanax scabripinnis (Characiformes, Characidae). Genetics and Molecular Biology, 23, 365–369.

    Article  Google Scholar 

  • Makrakis, M. C., Miranda, L. E., Makrakis, S., Xavier, A. M., Fontes, H. M., & Morlis, W. G. (2007). Migratory movements of pacu, Piaractus mesopotamicus, in the highly impounded Parana River. Journal of Applied Ichthyology, 23, 700–704.

    Google Scholar 

  • Malabarba, L. R., Reis, R. E., Vari, R. P., Lucena, Z. M. S., & Lucena, C. A. S. (1998). Phylogeny and classification of neotropical fishes. Porto Alegre: EDIPUCRS.

    Google Scholar 

  • Marques, F.P.L. (2000). Evolution of neotropical freshwater stingrays and their parasites: Taking into account space and time. Ph.D. Dissertation, University of Toronto, 325 p.

    Google Scholar 

  • Martin, R. A. (2005). Conservation of freshwater and euryhaline elasmobranchs: A review. Journal of the Marine Biological Association of the United Kingdom, 85, 1049–1073.

    Article  Google Scholar 

  • Martin, A. P., & Bermingham, E. (1998). Systematics and evolution of lower Central American cichlids inferred from analysis of cytochrome b gene sequence. Molecular Phylogenetics and Evolution, 9, 192–203.

    Article  CAS  PubMed  Google Scholar 

  • Matos de Abreu, M., Garcia Pereira, L. H., Barretto Vila, V., Foresti, F., & Oliveira, C. (2009). Genetic variability of two populations of Pseudoplatystoma reticulatum from the Upper Paraguay River Basin. Genetics and Molecular Biology, 32, 868–873.

    Article  Google Scholar 

  • Matsumoto, C. K., & Hilsdorf, A. W. S. (2009). Microsatellite variation and population genetic structure of a neotropical endangered Bryconinae species Brycon insignis Staindachner 1877: Implications for its conservation and sustainable management. Neotropical Ichthyology, 7, 395–402.

    Article  Google Scholar 

  • Mello, P., Venturieri, R., Honji, R., & Moreira, R. (2009). Threatened fishes of the world: Pseudoplatystoma corruscans (Agassiz, 1829) (Siluriformes: Pimelodidae). Environmental Biology of Fishes, 85, 359–360.

    Article  Google Scholar 

  • Melo, B. F., Sato, Y., Foresti, F., & Oliveira, C. (2013). The roles of marginal lagoons in the maintenance of genetic diversity in the Brazilian migratory fishes Prochilodus argenteus and P. costatus. Neotropical Ichthyology, 11, 625–636.

    Article  Google Scholar 

  • Melo, B. F., Ochoa, L. E., Vari, R. P., & Oliveira, C. (2016). Cryptic species in the Neotropical fish genus Curimatopsis (Teleostei, Characiformes). Zoologica Scripta. doi:10.1111/zsc.12178.

    Google Scholar 

  • Miller, R. R. (1966). Geographic distribution of Central American freshwater fishes. Copeia, 1966, 773–802.

    Article  Google Scholar 

  • Mitchell, R. W., Russell, W. H., & Elliott, W. R. (1977). Mexican eyeless characin fishes, genus Astyanax: Environment, distribution, and evolution. Special Publications of the Museum of Texas Technical University, 12, 1–89.

    Google Scholar 

  • MMA (Ministério do Meio Ambiente). (2004). Lista Nacional de Espécies de Invertebrados Aquáticos e Peixes Ameaçadas de Extinção (pp. 136–142). Diário Oficial da União, seção 1. http://www.scielo.br/scielo.php?script=sci_nlinks&ref=000101&pid=S1519-6984200700050001200018&lng=en.

  • Mojica, J.I., Usma, J.S., Lasso, R.A. (2012). Libro Rojo de Peces Dulceacuıcolas de Colombia. Doc. No. 26063, CO-BAC, Bogota, Colombia.

    Google Scholar 

  • Montoya, R. V., & Thorson, T. B. (1982). The bull shark (Carcharhinus leucas) and the largetooth sawfish (Pristis perotteti) in Lake Bayano, a tropical man-made impoundment in Panama. Environmental Biology of Fishes, 7, 341–347.

    Article  Google Scholar 

  • Montoya-Burgos, J. I. (2003). Historical biogeography of the catfish genus Hypostomus (Siluriformes: Loricariidae), with implications on the diversification of Neotropical ichthyofauna. Molecular Ecology, 12, 1855–1867.

    Article  CAS  PubMed  Google Scholar 

  • Morales, P., Vila, I., & Poulin, E. (2011). Genetic structure in remnant populations of an endangered cyprinodontid fish, Orestias ascotanensis, endemic to the Ascotan salt pan of the Altiplano. Conservation Genetics, 12, 1639–1643.

    Article  Google Scholar 

  • Moreau, M.-A., & Coomes, O. T. (2007). Aquarium fish exploitation in western Amazonia: Conservation issues in Peru. Environmental Conservation, 34, 12–22.

    Article  Google Scholar 

  • Moreira-Filho, O., & Bertollo, L. A. C. (1991). Astyanax scabripinnis (Pisces, Characidae): A species complex. Reviews in Brasilian Genetics, 14, 331–357.

    Google Scholar 

  • Morelli, S., Bertollo, L. A. C., Foresti, F., Moreira-Filho, O., & Toledo-Filho, S. A. (1983). Cytogenetic considerations on the genus Astyanax (Pisces, Characidae). I. Karyotypic variability. Caryologia, 36, 235–244.

    Google Scholar 

  • Moritz, C. (1994). Defining ‘evolutionary significant units’ for conservation. Trends in Ecology and Evolution, 9, 373–375.

    Article  CAS  PubMed  Google Scholar 

  • Morrone, J. J. (2002). Biogeographical regions under track and cladistics scrutiny. Journal of Biogeography, 29, 149–152.

    Article  Google Scholar 

  • Moyer, G. R., Winemiller, K. O., McPhee, M. V., & Turner, T. F. (2005). Historical demography, selection, and coalescence of mitochondrial and nuclear genes in Prochilodus species of northern South America. Evolution, 59, 599–610.

    Article  CAS  PubMed  Google Scholar 

  • Moyses, C. B., & Almeida-Toledo, L. F. (2002). Restriction fragment length polymorphism of mitochondrial DNA among five freshwater fish species of the genus Astyanax (Pisces, Characidae). Genetics and Molecular Biology, 25, 401–407.

    Article  CAS  Google Scholar 

  • Musilová, Z., Říčan, O., Janko, K., & Novák, J. (2008). Molecular phylogeny and biogeography of the Neotropical cichlid fish tribe Cichlasomatini (Teleostei: Cichlidae: Cichlasomatinae). Molecular Phylogenetics and Evolution, 46, 659–672.

    Article  PubMed  CAS  Google Scholar 

  • Nelson, J. S. (1994). Fishes of the world (3rd ed.). New York: Wiley.

    Google Scholar 

  • Nelson, J. S. (2006). Fishes of the World (5th ed.). New York: Wiley.

    Google Scholar 

  • Nielsen, J. L. (1995). Evolution and the aquatic ecosystem: Defining unique units in population conservation, American Fisheries Society Symposium 17. Bethesda: American Fisheries Society.

    Google Scholar 

  • Nobrega, M. F., & Lessa, R. P. (2007). Descripcao e composicao das capturas da frota pesqueira artesanal da regiao nordeste do Brasil. Arquivos Ciencia Marina, 40, 64–74.

    Google Scholar 

  • Ochoa, L. E., Pereira, L. H., Costa-Silva, G. J., Roxo, F. F., Batista, J. S., Formiga, K., Foresti, F., & Oliveira, C. (2015). Genetic structure and historical diversification of catfish Brachyplatystoma platynemum (Siluriformes: Pimelodidae) in the Amazon basin with implications for its conservation. Ecology and Evolution, 5, 2005–2020.

    Article  PubMed  PubMed Central  Google Scholar 

  • Olivares, A. M., Hrbek, T., Escobar, M. D., & Caballero, S. (2013). Population structure of the black arowana (Osteoglossum ferreirai) in Brazil and Colombia: Implications for its management. Conservation Genetics, 14, 695–703.

    Article  Google Scholar 

  • Oliveira, A. V., Prioli, A. J., Prioli, S. M. A. P., Bignotto, T. S., & Julio-Junior, H. F. (2006). Genetic diversity of invasive and native Cichla (Pisces: Perciformes) populations in Brazil with evidence of interspecific hybridization. Journal of Fish Biology, 69, 260–277.

    Article  CAS  Google Scholar 

  • Oliveira, C., Avelino, G. S., Abe, K. T., Mariguela, T. C., Benine, R. C., Ortí, G., Vari, R. P., & Castro, R. M. C. (2011). Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling. BMC Evolutionary Biology, 11, 275.

    Article  PubMed  PubMed Central  Google Scholar 

  • Ornelas-García, C. P., Domínguez-Domínguez, O., & Doadrio, I. (2008). Evolutionary history of the fish genus Astyanax Baird & Girard (1854) (Actinopterygii, Characidae) in Mesoamerica reveals multiple morphological homoplasies. BMC Evolutionary Biology, 8, 340.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Ortí, G., & Meyer, A. (1997). The radiation of characiform fishes and the limits of resolution of mitochondrial ribosomal DNA sequences. Systematic Biology, 46, 75–100.

    Article  PubMed  Google Scholar 

  • Palsbøll, P. J., Berube, M., & Allendorf, F. W. (2007). Identification of management units using population genetic data. Trends in Ecology and Evolution, 22, 11–16.

    Article  PubMed  Google Scholar 

  • Panarari-Antunes, R. S., Prioli, A. J., Prioli, S. M. A. P., Galdino, A. S., Julio Jr., H. F., & Prioli, L. M. (2011). Genetic variability of Brycon orbignyanus (Valenciennes, 1850) (Characiformes: Characidae) in cultivated and natural populations of the Upper Paraná River, and implications for the conservation of the species. Brazilian Archives of Biology and Technology, 54, 839–848.

    Article  Google Scholar 

  • Perdice, A., Bermingham, E., Montilla, A., & Doadrio, I. (2002). Evolutionary history of the genus Rhamdia (Teleostei: Pimelodidae) in Central America. Molecular Phylogenetics and Evolution, 25, 172–189.

    Article  CAS  Google Scholar 

  • Pereira, L. H. G., Foresti, F., & Oliveira, C. (2009). Genetic structure of the migratory catfish Pseudoplatystoma corruscans (Siluriformes: Pimelodidae) suggests homing behaviour. Ecology of Freshwater Fish, 18, 215–225.

    Article  Google Scholar 

  • Pereira, D., Mansur, M. C., Duarte, L. D., de Oliveira, A. S., Pimpao, D. M., Callil, C. T., Ituarte, C., Parada, E., Peredo, S., Darrigran, G., & Scarabino, F. (2014). Bivalve distribution in hydrographic regions in South America: Historical overview and conservation. Hydrobiologia, 735, 15–44.

    Google Scholar 

  • Piorski, N. M., Sanches, A., Carvalho-Costa, L. F., Hatanaka, T., Carrillo-Avila, M., Freitas, P. D., & Galetti Jr., P. M. (2008). Contribution of conservation genetics in assessing neotropical freshwater fish biodiversity. Brazilian Journal of Biology, 68, 1039–1050.

    Article  CAS  Google Scholar 

  • Protas, M., Conrad, M., Gross, J. B., Tabin, C., & Borowsky, R. (2007). Regressive evolution in the Mexican cave tetra, Astyanax mexicanus. Current Biology, 17, 452–454.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pybus, O. G., & Rambaut, A. (2002). GENIE: Estimating demographic history from molecular phylogenies. Bioinformatics, 18, 1404–1405.

    Article  CAS  PubMed  Google Scholar 

  • Queiroz, H. L. (1999). Artisanal fisheries of pirarucu at the Mamiraua Ecological Station. In C. Padoch, J. M. Ayres, M. Pinedo-Vasquez, & A. Henderson (Eds.), Varzea: Diversity, development, and conservation of Amazonia’s whitewater floodplains (pp. 83–99). Bronx: The New York Botanical Garden Press.

    Google Scholar 

  • Queiroz, H. L., & Crampton, W. G. R. (Eds.). (1999). Estrategias para Manejo de Recursos Pesqueiros em Mamiraua. Brasilia: Sociedade Civil Mamiraua, MCT – CNPq.

    Google Scholar 

  • Queiroz, H. L., & Sardinha, A. D. (1999). A preservacão e o uso sustentado dos pirarucus em Mamiraua. In H. L. Queiroz & W. G. R. Crampton (Eds.), Estrategias para Manejo de Recursos Pesqueiros de Mamiraua (pp. 108–141). Brasilia: Sociedade Civil Mamiraua, CNPq.

    Google Scholar 

  • Rabello-Neto, J.G. (1999). Biologia reproductiva e alimentação natural do aruanã preta O. ferreirai (Kanazawa, 1966), no municipio de Barcelos, médio Rio Negro, Amazonas, Brasil. Dissertation, Universidade do Amazonas, Manaus.

    Google Scholar 

  • Ramstad, K. M., Woody, C. A., Sage, G. K., & Allendorf, F. W. (2004). Founding events influence genetic population structure of sockeye salmon (Oncorhynchus nerka) in Lake Clark, Alaska. Molecular Ecology, 13, 277–290.

    Google Scholar 

  • Räsänen, M. E., Salo, J. S., & Kalliola, R. J. (1987). Fluvial perturbance in the western Amazon basin: Regulation by long-term sub-Andean tectonics. Science, 238, 1398–1401.

    Article  PubMed  Google Scholar 

  • Reeves, R. G., & Bermingham, E. (2006). Colonization, population expansion, and lineage turnover: Phylogeography of Mesoamerican characiform fish. Biological Journal of the Linnean Society, 88, 235–255.

    Article  Google Scholar 

  • Reis, R. E., Kullander, S. O., & Ferraris, C. J. (2004). Checklist of freshwater fishes of South and Central America. Porto Alegre: EDIPUCRS.

    Google Scholar 

  • Reiss, H., Hoarau, G., Dickey-Collas, M., & Wolff, W. J. (2009). Genetic population structure of marine fish: Mismatch between biological and fisheries management units. Fish and Fisheries, 10, 361–395.

    Article  Google Scholar 

  • Renno, J.-F., Guyomard, R., Boujard, T., & Bastide, C. (1989). Genetic differentiation among four species of Leporinus (Anostomidae, Pisces) in French Guiana. Aquatic Living Resources, 2, 127–134.

    Article  Google Scholar 

  • Renno, J.-F., Berrebi, P., Boujard, T., & Guyomard, R. (1990). Intraspecific genetic differentiation of Leporinus friderici (Anostomidae, Pisces) in French Guyana and Brazil: A genetic approach to the refuge theory. Journal of Fish Biology, 36, 85–95.

    Article  Google Scholar 

  • Renno, J.-F., Machordom, A., Blanquer, A., & Boursot, P. (1991). Polymorphism of mitochondrial genes in populations of Leporinus friderici (Bloch, 1974): Intraspecific structure and zoogeography of the Neotropical fish. Genetica, 84, 137–142.

    Article  Google Scholar 

  • Renno, J. F., Hubert, N., Torrico, J. P., Duponchelle, F., Nunez Rodriguez, J., Garcia Davila, C., Willis, S. C., & Desmarais, E. (2006). Phylogeography of Cichla (Cichlidae) in the upper Madera basin (Bolivian Amazon). Molecular Phylogenetics and Evolution, 41, 503–510.

    Article  CAS  PubMed  Google Scholar 

  • Rican, O., Zardoya, R., & Doadrio, I., (2008). Phylogenetic relationships of Middle American cichlids (Cichlidae, Heroini) based on combined evidence from nuclear genes, mtDNA, and morphology. Molecular Phylogenetics and Evolution, 49, 941–957.

    Google Scholar 

  • Rogers, A. R., & Harpending, H. (1992). Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 99, 552–569.

    Google Scholar 

  • Rohner, N., Jarosz, D. F., Kowalko, J. E., Yoshizawa, M., Jeffery, W. R., Borowsky, R. L., Lindquist, S., & Tabin, C. J. (2013). Cryptic variation in morphological evolution: HSP90 as a capacitor for loss of eyes in cavefish. Science, 342, 1372–1375.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rueda, E. C., Carriquiriborde, P., Monzón, A. M., Somoza, G. M., & Ortí, G. (2013). Seasonal variation in genetic population structure of sabalo (Prochilodus lineatus) in the Lower Uruguay River. Genetica, 141, 401–407.

    Article  PubMed  Google Scholar 

  • Ryder, O. (1986). Species conservation and systematics: The dilemma of subspecies. Trends in Ecology and Evolution, 1, 9–10.

    Article  Google Scholar 

  • Santos, C. H. A., Santana, G. X., Sa Leitao, C. S., Paula-Silva, M. N., & Almeida-Val, V. M. F. (2016). Loss of genetic diversity in farmed populations of Colossoma macropomum estimated by microsatellites. Animal Genetics, 47, 373–376.

    Google Scholar 

  • Sadowsky, V. (1971). Note on bull shark, Carcharhinus leucas, in the lagoon region of Cananeia, Brazil. Boletim Instituto Oceanografico, 20, 71–78.

    Google Scholar 

  • Saint-Paul, U., Zuanon, J., Correa, M. A. V., García, M., Fabré, N. N., Berger, U., & Junk, W. J. (2000). Fish communities in central Amazonian white- and blackwater floodplains. Environmental Biology of Fishes, 57, 235–250.

    Article  Google Scholar 

  • Sanches, A., & Galetti Jr., P. M. (2007). Genetic evidence of population structuring in the neotropical freshwater fish Brycon hilarii (Valenciennes, 1850). Brazilian Journal of Biology, 67, 889–895.

    Article  CAS  Google Scholar 

  • Santini, F., Nguyen, M. T. T., Sorenson, L., Waltzek, T. B., Lynch Alfaro, J. W., Eastman, J. M., & Alfaro, M. E. (2013). Do habitat shifts drive diversification in teleost fishes? An example from the pufferfishes (Tetraodontidae). Journal of Evolutionary Biology, 26, 1003–1018.

    Article  CAS  PubMed  Google Scholar 

  • Santos, M. C. F., Ruffino, M. L., & Farias, I. P. (2007). High levels of genetic variability and panmixia of the tambaqui Colossoma macropomum (Cuvier, 1816) in the main channel of the Amazon River. Journal of Fish Biology, 71, 33–44.

    Article  CAS  Google Scholar 

  • Santos, U., Völcker, C. M., Belei, F. A., Cioffi, M. B., Bertollo, L. A., Paiva, S. R., & Dergam, J. A. (2009). Molecular and karyotypic phylogeography in the neotropical Hoplias malabaricus (Erythrinidae) fish in eastern Brazil. Journal of Fish Biology, 75, 2326–2343.

    Article  CAS  PubMed  Google Scholar 

  • Santos, C. H. A., Leitão, M. A. B., Sousa, C. F. S., Santana, G. X., Paula-Silva, M. N., & Almeida-Val, V. M. F. (2012). Genetic variability of wild and captivity populations of Colossoma macropomum (Cuvier, 1818). Acta Scientiarum Biological Sciences, 34, 191–197.

    Google Scholar 

  • Santos, C. H. A., Sa Leitao, C. S., Paula-Silva, M. N., & Almeida-Val, M. F. (2014). Genetic relationships between captive and wild subpopulations of Arapaima gigas (Schinz, in Cuvier, 1822). International Journal of Fisheries and Aquaculture, 6, 108–123.

    Article  Google Scholar 

  • Schneider, C. H., Gross, M. C., Terencio, M. L., & Porto, J. I. (2012). Cryptic diversity in the mtDNA of the ornamental fish Carnegiella strigata. Journal of Fish Biology, 81, 1210–1224.

    Article  CAS  PubMed  Google Scholar 

  • Seeb, L. W., Antonovich, A., Banks, M. A., Beacham, T. D., Bellinger, M. R., Blankenship, S. M., Campbell, M. R., Decovich, N. A., Garza, J. C., Guthrie III, C. M., & Lundrigan, T. A. (2007). Development of a standardized DNA database for Chinook salmon. Fisheries, 32, 540–552.

    Article  Google Scholar 

  • Shaklee, J. B., Beacham, T. D., Seeb, L., & White, B. A. (1999). Managing fisheries using genetic data: Case studies from four species of Pacific salmon. Fisheries Research, 43, 45–78.

    Article  Google Scholar 

  • Shaw, P. W., Carvalho, G. R., Magurran, A. E., & Seghers, B. H. (1991). Population differentiation in Trinidadian guppies (Poecilia reticulata): Patterns and problems. Journal of Fish Biology, 39, 203–209.

    Article  Google Scholar 

  • Sivasundar, A., Bermingham, E., & Ortí, G. (2001). Population structure and biogeography of migratory freshwater fishes (Prochilodus: Characiformes) in major South American rivers. Molecular Ecology, 10, 407–417.

    Article  CAS  PubMed  Google Scholar 

  • Slatkin, M. (1994). An exact test for neutrality based on the Ewens sampling distribution. Genetical Research, 64, 71–74.

    Article  CAS  PubMed  Google Scholar 

  • Slatkin, M. (1996). A correction to the exact test based on the Ewens sampling distribution. Genetical Research, 68, 259–260.

    Article  CAS  PubMed  Google Scholar 

  • Sofia, S. H., Silva, C. R. M., Galindo, B. A., Almeida, F. S., Sodre, L. M. K., & Martinez, C. B. R. (2006). Population genetic structure of Astyanax scabripinnis (Teleostei, Characidae) from an urban stream. Hydrobiologia, 553, 245–254.

    Article  CAS  Google Scholar 

  • Sokal, R. R., & Jacquez, G. M. (1991). Testing inferences about microevolutionary processes by means of spatial autocorrelation analysis. Evolution, 45, 152–168.

    Article  PubMed  Google Scholar 

  • Sokal, R. R., Oden, N. L., & Thomson, B. A. (1997). A simulation study of microevolutionary inferences by spatial autocorrelation analysis. Biological Journal of the Linnean Society, 60, 73–93.

    Article  Google Scholar 

  • Soto, J.M.R., & Castro-Neto, N. (1998). Revisao dos registros de tubarão touro, Carcharhinus leucas (Valenciennes, 1839) (Chondrichthyes, Carcharhinidae), em rios e lagunas brasileiras. In Resumos Expandidos da 11a Semana Nacional de Oceanografia (pp. 314–316). Rio Grande: FURG.

    Google Scholar 

  • Stewart, D. J. (2013a). A new species of Arapaima (Osteoglossomorpha: Osteoglossidae) from the Solimões river, Amazonas State, Brazil. Copeia, 2013, 470–476.

    Article  Google Scholar 

  • Stewart, D. J. (2013b). Redescription of Arapaima agassizzi (Valenciennes), a rare fish from Brazil (Osteoglossomorpha: Osteoglossidae). Copeia, 2013, 38–51.

    Article  Google Scholar 

  • Strecker, U., Bernatchez, L., & Wilkens, H. (2003). Genetic divergence between cave and surface populations of Astyanax in Mexico (Characidae, Teleostei). Molecular Ecology, 12, 699–710.

    Article  CAS  PubMed  Google Scholar 

  • Strecker, U., Faundez, V. H., & Wilkens, H. (2004). Phylogeography of surface and cave Astyanax (Teleostei) from Central and North America based on cytochrome b sequence data. Molecular Phylogenetics and Evolution, 33, 469–481.

    Article  CAS  PubMed  Google Scholar 

  • Strecker, U., Hausdorf, B., & Wilkens, H. (2012). Parallel speciation in Astyanax cave fish (Teleostei) in northern Mexico. Molecular Phylogenetics and Evolution, 62, 62–70.

    Google Scholar 

  • Strimmer, K., & Pybus, O. G. (2001). Exploring the demographic history of DNA sequences using the generalized skyline plot. Molecular Biology and Evolution, 18, 2298–2305.

    Google Scholar 

  • Suk, H. Y., & Neff, B. D. (2009). Microsatellite genetic differentiation among populations of the Trinidadian guppy. Heredity, 102, 425–434.

    Article  CAS  PubMed  Google Scholar 

  • Sullivan, J. P., Lundberg, J. G., & Hardman, M. (2006). A phylogenetic analysis of the major groups of catfish (Teleostei: Siluriformes) using rag1 and rag2 nuclear gene sequences. Molecular Phylogenetics and Evolution, 41, 636–662.

    Article  CAS  PubMed  Google Scholar 

  • Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585–595.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Telles, M. P., Collevatti, R. G., Braga, R. S., Guedes, L. B., Castro, T. G., Costa, M. C., Silva-Júnior, N. J., Barthem, R. B., & Diniz-Filho, J. A. (2014). Geographical genetics of Pseudoplatystoma punctifer (Castelnau, 1855) (Siluriformes, Pimelodidae) in the Amazon Basin. Genetics and Molecular Research, 13, 3656–3666.

    Article  CAS  PubMed  Google Scholar 

  • Terencio, M. L., Schneider, C. H., & Porto, J. I. R. (2012). Molecular signature of the D-loop in the brown pencilfish Nannostomus eques (Characiformes, Lebiasinidae) reveals at least two evolutionary units in the Rio Negro Basin, Brazil. Journal of Fish Biology, 81, 110–124.

    Article  CAS  PubMed  Google Scholar 

  • Thorson, T. B. (1971). Movements of bull sharks, Carcharhinus leucas, between the Caribbean Sea and Lake Nicaragua demonstrated by tagging. Copeia, 1971, 336–338.

    Article  Google Scholar 

  • Thorson, T. B. (1972). Status of bull shark, Carcharhinus leucas, in Amazon River. Copeia, 1971, 601–605.

    Article  Google Scholar 

  • Torres, R. A., Foresti, F., & Olivera, C. (1998). Comparative cytogenetic studies in allopatric populations of Tricomycterus paolence (Siluriformes, Tricomycteridae). Cytologia, 63, 107–114.

    Article  Google Scholar 

  • Torrico, J. P., Hubert, N., Desmarais, E., Duponchelle, F., Rodriguez, J. N., Montoya-Burgos, J., Davila, C. G., Carvajal-Vallejos, F. M., Grajales, A. A., Bonhomme, F., & Renno, J. F. (2009). Molecular phylogeny of the genus Pseudoplatystoma: Biogeographic and evolutionary implications. Molecular Phylogenetics and Evolution, 51, 588–594.

    Article  CAS  PubMed  Google Scholar 

  • Tringali, M. D., Bert, T. M., Seyoum, S., Bermingham, E., & Bartolacci, D. (1999). Molecular phylogenetics and ecological diversification of the transisthmian fish genus Centropomus (Perciformes: Centropomidae). Molecular Phylogenetics and Evolution, 13, 193–207.

    Article  CAS  PubMed  Google Scholar 

  • Tripathi, N., Hoffmann, M., Willing, E. M., Lanz, C., Weigel, D., & Dreyer, C. (2009). Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation. Proceedings of the Royal Society B: Biological Sciences, 276, 2195–2208.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Turner, T. F., McPhee, M. V., Campbell, P., & Winemiller, K. O. (2004). Phylogeography and intraspecific genetic variation of prochilodontid fishes endemic to rivers of northern South America. Journal of Fish Biology, 64, 186–201.

    Article  CAS  Google Scholar 

  • Vari, R. P., & Weitzman, S. H. (1990). A review of the phylogenetic biogeography of the freshwater fishes of South America. In G. Peters & R. Hutterer (Eds.), Vertebrates in the tropics (pp. 381–394). Bonn: Alexander Koenig Zoological Research Institute and Zoological Museum.

    Google Scholar 

  • Viana da Silva, J., Hallerman, E. M., Orfão, L. H., & Hilsdorf, A. W. S. (2015). Genetic structuring of Salminus hilarii Valenciennes, 1850 (Teleostei: Characiformes) in the Rio Paraná basin as revealed by microsatellite and mitochondrial DNA markers. Neotropical Ichthyology, 13, 547–556.

    Article  Google Scholar 

  • Vicari, M. R., Artoni, R. F., & Bertollo, L. A. C. (2005). Comparative cytogenetics of Hoplias malabaricus (Pisces, Erythrinidae): A population analysis in adjacent hydrographic basins. Genetics and Molecular Biology, 28, 103–110.

    Article  Google Scholar 

  • Vitalis, R., Dawson, K., & Boursot, P. (2001). Interpretation the heterogeneity of F values: A suggestion and a correction. Genetics, 84, 399–401.

    Google Scholar 

  • Vitorino, R. C., Oliveira, C., Margarido, V. P., & Venere, P. C. (2015). Genetic diversity of Arapaima gigas (Schinz, 1822) (Osteoglossiformes: Arapaimidae) in the Araguaia-Tocantins basin estimated by ISSR marker. Neotropical Ichthyology, 13, 557–568.

    Article  Google Scholar 

  • Waples, R. S. (1991). Pacific salmon, Oncorynchus spp., and the definition of ‘species’ under the Endangered Species Act. Marine Fisheries Review, 53, 11–22.

    Google Scholar 

  • Waples, R. S. (1998). Evolutionarily significant units, distinct population segments, and the endangered species act: Reply to Pennock and Dimmick. Conservation Biology, 12, 718–721.

    Article  Google Scholar 

  • Wasko, A. P., & Galetti Jr., P. M. (2002). RAPD analysis in the Neotropical fish Brycon lundii: Genetic diversity and its implications for the conservation of the species. Hydrobiologia, 474, 131–137.

    Article  Google Scholar 

  • Wasko, A. P., Martins, C., Oliveira, C., Senhorini, J. A., & Foresti, F. (2004). Genetic monitoring of the Amazonian fish matrinchã (Brycon cephalus) using RAPD markers: Insights into supporting and conservation programmes. Journal of Applied Ichthyology, 20, 48–52.

    Article  CAS  Google Scholar 

  • Watson, L. C., Stewart, D. J., & Kretzer, A. M. (2016). Genetic diversity and population structure of the threatened giant Arapaima in southwestern Guyana: Implications for their conservation. Copeia, 104, 864–872. in press.

    Article  Google Scholar 

  • Watterson, G. A. (1978). The homozygosity test of neutrality. Genetics, 88, 405–417.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Weiss, G. H., & Kimura, M. (1965). A mathematical analysis of the stepping stone model of genetic correlation. Journal of Applied Probability, 2, 129–149.

    Article  Google Scholar 

  • Wilkens, H. (1988). Evolution and genetics of epigean and cave Astyanax fasciatus (Characidae, Pisces). Support for the neutral mutation theory. In M. K. Hecht & B. Wallace (Eds.), Evolutionary biology (Vol. 23, pp. 271–367). New York: Plenum Publishing.

    Chapter  Google Scholar 

  • Wilkens, H. (2010). Genes, modules and the evolution of cave fish. Heredity, 105, 413–422.

    Article  CAS  PubMed  Google Scholar 

  • Wilkens, H., & Burns, R. J. (1972). A new Anoptichthys cave population (Characidae, Pisces). Annales de Spéleologie, 27, 263–270.

    Google Scholar 

  • Willing, E. V., Bentzen, P., Van Oosterhout, C., Hoffmann, M., Cable, J., Breden, F., Weigel, D., & Dreyer, C. (2010). Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies. Molecular Ecology, 19, 968–984.

    Article  PubMed  Google Scholar 

  • Willis, S. C., Nunes, M. S., Montana, C. G., Farias, I. P., & Loverjoy, N. R. (2007). Systematics, biogeography, and evolution of the Neotropical peacock basses Cichla (Perciformes: Cichlidae). Molecular Phylogenetics and Evolution, 44, 291–307.

    Article  CAS  PubMed  Google Scholar 

  • Wimberger, P. H., Reis, R. E., & Thornton, K. R. (1998). Mitochondrial phylogenetics, biogeography, and evolution of parental care and mating systems in Gymnogeophagus (Perciformes: Cichlidae). In L. R. Malabarba, R. E. Reis, R. P. Vari, Z. M. S. Lucena, & C. A. S. Lucena (Eds.), Phylogeny and classification of neotropical fishes. Porto Alegre: Edipucrs.

    Google Scholar 

  • Winans, G. A., Viele, D., Grover, A., Palmer-Zwahlen, M., Teel, D., & Van Doornik, D. (2001). Update of genetic stock identification of Chinook salmon in the Pacific Northwest: Test fisheries in California. Reviews in Fisheries Science, 9, 213–237.

    Article  Google Scholar 

  • Wright, S. (1943). Isolation by distance. Genetics, 28, 114–138.

    CAS  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer International Publishing AG

About this chapter

Cite this chapter

Hilsdorf, A.W.S., Hallerman, E.M. (2017). Genetic Resources of Freshwater Neotropical Fishes. In: Genetic Resources of Neotropical Fishes. Springer, Cham. https://doi.org/10.1007/978-3-319-55838-7_4

Download citation

Publish with us

Policies and ethics